Rapid and sensitive sequence similarity searches powered by parallel computing technology
 
NEWS:
9 April 2008: Version 5.0 of PARALIGN has been released. It is available from Sencel Bioinformatics.

22 October 2007: Searches now running on the Titan cluster.

25 January 2007: Updated graphical result overview with hit distribution graph and possibilities for resubmission of a selected fragment of the query sequence.


Provided by the
CMBN Bioinformatics group
and
Sencel Bioinformatics.
Supported by the
Programme for Functional Genomics in
Norway (FUGE)
of the
Research Council of Norway.
Search

PLEASE NOTE: Paralign has been discontinued.
The service is now based on SWIPE that uses full Smith-Waterman alignments.
The service may be unstable due to the recent upgrade.

Query type    help
Query sequence    help
As text:
Or as file (max 100 KB):
Check this box to mask out low-complexity areas in your query sequence.
Database    help
Misc.    help
Advanced options
Algorithm    help Amino acid scoring    help Nucl. acid scoring    help Expect range    help
–
Query Strands    help Max hits    help Max alignments    help Max sub-alignments    help
Search by organisms    help
Eukaryota Archaea Prokaryota
Arabidopsis thaliana Bacillus cereus Bos taurus
Caenorhabditis elegans Chlamydomonas reinhardtii
 Danio rerio
Dictyostelium discoideum Drosophilia melanogaster Escherichia coli K12
Hepatitis C virus Homo sapiens Human cytomegalovirus (HCMV)
Mus musculus Mycobacterium tuberculosis Mycoplasma pneumoniae
Neisseria gonorrhoeae Neisseria meningitidis Oryza sativa
Plasmodium falciparum Pneumocystis carinii Rattus norvegicus
Saccharomyces cerevisiae Salmo salar Schizosaccharomyces pombe
Takifugu rubripes Xenopus laevis Zea mays
Taxonomy identifier    help